PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G195300.1.p
Common NamePRUPE_ppa004680mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 497aa    MW: 55192.8 Da    PI: 5.2525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G195300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12321366454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Prupe.2G195300.1.p 321 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 366
                         799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5125217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-18318380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-14320370No hitNo description
PfamPF000107.3E-10321366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-17321381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-16323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSLPQE TSPSLQQRLQ FIVQSQPDWW SYAIFWQPSN DHQDNGRLFL  60
TWGDGHFQGS KDPSAKHHNN PYGILSERRK ILKGIQSLIN DNNPDHHQDS IMDHMGLDAD  120
VSDGEWFYVM SLARSFSIGE TTISASVPGK AFSSGSVVWL TGSHELQFYN CDRAKEAQMH  180
GFQTLVCIPT PTGVLEMGSS DSIRENWSLV QQAKSLFGSD LICSVADQPD PETRSPIDFI  240
NRNFSFADIG IIAGVEEEED DKKEVALDLT MMKRKGGNPG TGLYPDSNAN PKPDYSDSDG  300
PKRTPKKRGR KPGLGRDTPL NHVEAERQRR EKLNHRFYAL RAVVPNVSRM DKASLLSDAV  360
SYINELKTKV DELESQVQRE SKKVKVETGD NLDIQSTTTS VEQIAKPPSS SANGSGLEVE  420
VKIVGTDAMI RVQSENVNYP SARLMAALRD LELQIHHASL SCINELMLQD IVLKVPENMR  480
SEDSLKSALL RILDQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A2e-33182172192Transcription factor MYC3
4rs9_A2e-33182172192Transcription factor MYC3
4rqw_B2e-33182172192Transcription factor MYC3
4rqw_A2e-33182172192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219048.10.0hypothetical protein PRUPE_ppa004680mg
TrEMBLM5X2D40.0M5X2D4_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-71NACL-inducible gene 1